You can actually do this with [**line filters**][1].

1. Select the filter option from the Selection Dialog    
   ![Select Filter][2]
2. Go to the Linefilters tab, enable line filters and then compose a regular expression that *matches* lines you want to filter out.    
  ![Line Filter][3]
3. In the results, it will highlight filtered lines in a different color, but it won't treat them as differences in the individual file or folder summary.  
  ![Filtered Result][4]

----

In your particular case, you'll want to find a regex pattern that matches your naming convention, but something like this should work:

[`@version \$Revision: \d\.\d*`](http://regexr.com/)  

[![Regexr Demo][5]][6]


  [1]: http://manual.winmerge.org/Filters.html
  [2]: https://i.stack.imgur.com/f7EuA.png
  [3]: https://i.stack.imgur.com/8fLca.png
  [4]: https://i.stack.imgur.com/1J4vV.png
  [5]: https://i.stack.imgur.com/qIxOY.png
  [6]: http://regexr.com/3etqn

I have many files containing following types of line -                

    * @version $Revision: 1.xxx  

  
I want this type of line to be ignored while comparing using winmerge. I have tried with line filters. But, till not able to do that.
Can any one help me in this regard?